Thanks for all of the feedback. Okay, I think I made some progress today. My main table is square to the MasterPlate (checked with both my Woodpeckers 1281 square and Wixey digital angle gauge), so I am fairly sure the different measurements vs. height before are not due to a lack of 90°. What I did come to a conclusion on is that the straw trick that Ed recommended isn't working as well in my shop unfortunately.

Going back and looking at the picture that Ed posted it looks like the straw he used is probably a larger diameter than the ones I use in my shop for cleaning up glue runout, etc. Using the straw and iterating many times I observed the SawGauge 1.0 inadvertently moving and affecting the measurement so the straw is affecting my measurements. I even saw the straw deform a bit at times, so I think even the straw wall thickness is likely a factor affecting the measurement too. So, I remembered that I had some steel 1/4" x 1" dowels in the shop that I bought for a project but never used. Using this instead of the straw yielded much more consistent AND lower measurements than before.
With connector tubes installed and locked to the aux table, I get +0.003" at the back of the MasterPlate and -0.001" at the front with 0.0 at center. This was for the right miter slot which is the only slot I ever use.
For the left slot, I get +0.002" at the back of the MasterPlate and 0.0 at the front with 0.0 at center.
I gave up on measurements without the connector tubes installed because I couldn't get repeatable results, i.e. it changes every time. Almost seems like you can sneeze on the main table and the dial indicator will deviate 0.003 or more. Not looking to do an alignment just yet given these measurements, but at least now I know that I can get some use out of my Woodpeckers SawGauge 1.0 with this workaround. If I hadn't already bought it, I would seriously consider getting the MagSwitch Saw Indicator (
https://magswitch.com/product/universal-saw-indicator/) or copying Dusty's bearing solution.

- IMG_5382.jpg (421.26 KiB) Viewed 1359 times

- IMG_5383.jpg (445.28 KiB) Viewed 1359 times